Bisphenol A (BPA) is a commonly used endocrine-disrupting chemical found in high levels in wastewater worldwide. Aerobic denitrification is a promising alternative to conventional nitrogen removal processes. However, the effects of BPA on this novel nitrogen removal process have rarely been reported. Herein, we investigated the removal and interaction effects of BPA (0, 0.1, 1, and 10 mg/L) in aerobic denitrifying cultures. Our experimental results demonstrated that the aerobic denitrification system could remove 66%-86% of BPA from wastewater. Fourier transform infrared spectroscopy revealed that polysaccharides and amides were the primary sites for adsorption. An increase in the type and number of intermolecular hydrogen bonds might enhance the ability of aerobic denitrifying cultures to adsorb BPA. Adsorption kinetics analysis demonstrated that inhomogeneous multilayer adsorption was the leading cause of BPA removal. Adsorbed BPA decreased the sedimentation, flocculation, and hydrophobicity of aerobic denitrifying cultures, triggering changes in the levels of proteins and polysaccharides in extracellular polymeric substances. As the influent BPA increased from 0 to 10 mg/L, the nitrate-nitrogen and total organic carbon in the reactor effluent increased from 0.4 ± 0.2 and 26 ± 7.9 mg/L to 18.8 ± 9.3 and 116.2 ± 55.6 mg/L, respectively. BPA (initial concentration range: 1-10 mg/L) significantly influenced the abundance of genes involved in the nitrogen transformation pathway, contributing to the increase in the abundance of gaseous NOx-transformed genes and altering the relative abundance of denitrifying bacteria, particularly Thauera. Correlation analyses revealed that Pseudomonas, Thauera, and AKYH767 are important for maintaining systemic nitrogen transformations and BPA adsorption.