PEG-mCherry interactions beyond classical macromolecular crowding.

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Tác giả: Liam Haas-Neill, Khalil Joron, Eitan Lerner, Sarah Rauscher

Ngôn ngữ: eng

Ký hiệu phân loại: 353.5332 *Administration of social welfare

Thông tin xuất bản: United States : Protein science : a publication of the Protein Society , 2025

Mô tả vật lý:

Bộ sưu tập: NCBI

ID: 214651

The dense cellular environment influences bio-macromolecular structure, dynamics, interactions, and function. Despite advancements in understanding protein-crowder interactions, predicting their precise effects on protein structure and function remains challenging. Here, we elucidate the effects of PEG-induced crowding on the fluorescent protein mCherry using molecular dynamics simulations and fluorescence-based experiments. We identify and characterize specific PEG-induced structural and dynamical changes in mCherry. Importantly, we find interactions in which PEG molecules wrap around specific surface-exposed residues in a binding mode previously observed in protein crystal structures. Fluorescence correlation spectroscopy experiments capture PEG-induced changes, including aggregation, suggesting a potential role for the specific PEG-mCherry interactions identified in simulations. Additionally, mCherry fluorescence lifetimes are influenced by PEG and not by the bulkier crowder dextran or by another linear polymer, polyvinyl alcohol, highlighting the importance of crowder-protein soft interactions. This work augments our understanding of macromolecular crowding effects on protein structure and dynamics.
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