Unique aspects of fiber degradation by the ruminal ethanologen Ruminococcus albus 7 revealed by physiological and transcriptomic analysis [electronic resource]

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Tác giả:

Ngôn ngữ: eng

Ký hiệu phân loại: 621.48 Nuclear engineering

Thông tin xuất bản: Washington, D.C. : Oak Ridge, Tenn. : United States. Dept. of Energy. Office of Science ; Distributed by the Office of Scientific and Technical Information, U.S. Dept. of Energy, 2014

Mô tả vật lý: Size: Article No. 1066 : , digital, PDF file.

Bộ sưu tập: Metadata

ID: 263751

 Bacteria in the genus <
 i>
 Ruminococcus<
 /i>
  are ubiquitous members of the mammalian gastrointestinal tract. In particular, they are important in ruminants where they digest a wide range of plant cell wall polysaccharides. For example, <
 i>
 Ruminococcus albus 7<
 /i>
  is a primary cellulose degrader that produces acetate usable by its bovine host. Moreover, it is one of the few organisms that ferments cellulose to form ethanol at mesophilic temperatures <
 i>
 in vitro<
 /i>
 . The mechanism of cellulose degradation by <
 i>
 R. albus 7<
 /i>
  is not well-defined and is thought to involve pilin-like proteins, unique carbohydrate-binding domains, a glycocalyx, and cellulosomes. We used a combination of comparative genomics, fermentation analyses, and transcriptomics to further clarify the cellulolytic and fermentative potential of <
 i>
 R. albus 7<
 /i>
 . A comparison of the <
 i>
 R. albus 7<
 /i>
  genome sequence against the genome sequences of related bacteria that either encode or do not encode cellulosomes revealed that <
 i>
 R. albus 7<
 /i>
  does not encode for most canonical cellulosomal components. Fermentation analysis of <
 i>
 R. albus 7<
 /i>
  revealed the ability to produce ethanol and acetate on a wide range of fibrous substrates <
 i>
 in vitro<
 /i>
 . Global transcriptomic analysis of <
 i>
 R. albus 7<
 /i>
  grown at identical dilution rates on cellulose and cellobiose in a chemostat showed that this bacterium, when growing on cellulose, utilizes a carbohydrate-degrading strategy that involves increased transcription of the rare carbohydrate-binding module (CBM) family 37 domain and the tryptophan biosynthetic operon. Our data suggest that <
 i>
 R. albus 7<
 /i>
  does not use canonical cellulosomal components to degrade cellulose, but rather up-regulates the expression of CBM37-containing enzymes and tryptophan biosynthesis. This study contributes to a revised model of carbohydrate degradation by this key member of the rumen ecosystem.
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