Integrating biofuels production with bioproducts presents an opportunity to explore options for recovering high-value chemicals as additional revenue-generating products from biofuel conversion pathways. Thus, the overall objective of this project was to develop a comprehensive separation strategy to economically recover valuable methoxyphenols (MPs) consisting of guaiacol, 4-methylguaiacol, 4-ethylguaiacol, 4-propylguaiacol, eugenol, and isoeugenol from biocrude as building blocks to demonstrate that bioproducts could enable cost-effective production of biofuels via integrated catalytic pyrolysis and hydroprocessing. The upgradability of the remaining biocrude fraction to biofuel after separation of the products was evaluated by hydrotreating. Finally, techno-economic analysis (TEA) was performed to examine the economic potential of recovering select MPs from biocrude in parallel with biofuels production.