Generation of super-resolution images from barcode-based spatial transcriptomics by deep image prior.

 0 Người đánh giá. Xếp hạng trung bình 0

Tác giả: Sungwoo Bae, Hongyoon Choi, Jinyeong Choi, Seungho Cook, Hyung-Jun Im, Daeseung Lee, Dongjoo Lee, Jeongbin Park, Seongjin Yoo

Ngôn ngữ: eng

Ký hiệu phân loại: 227.9 *Catholic epistles

Thông tin xuất bản: United States : Cell reports methods , 2025

Mô tả vật lý:

Bộ sưu tập: NCBI

ID: 496289

Spatially resolved transcriptomics (ST) has revolutionized the field of biology by providing a powerful tool for analyzing gene expression in situ. However, current ST methods, particularly barcode-based methods, have limitations in reconstructing high-resolution images from barcodes sparsely distributed in slides. Here, we present SuperST, an algorithm that enables the reconstruction of dense matrices (higher-resolution and non-zero-inflated matrices) from low-resolution ST libraries. SuperST is based on deep image prior, which reconstructs spatial gene expression patterns as image matrices. Compared with previous methods, SuperST generated output images that more closely resembled immunofluorescence images for given gene expression maps. Furthermore, we demonstrated how one can combine images created by SuperST with computer vision algorithms. In this context, we proposed a method for extracting features from the images, which can aid in spatial clustering of genes. By providing a dense matrix for each gene in situ, SuperST can successfully address the resolution and zero-inflation issue.
Tạo bộ sưu tập với mã QR

THƯ VIỆN - TRƯỜNG ĐẠI HỌC CÔNG NGHỆ TP.HCM

ĐT: (028) 36225755 | Email: tt.thuvien@hutech.edu.vn

Copyright @2024 THƯ VIỆN HUTECH