NetworkCommons: bridging data, knowledge, and methods to build and evaluate context-specific biological networks.

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Tác giả: Martin Garrido-Rodriguez, Olga Ivanova, Sophia Müller-Dott, Victor Paton, Livia Perfetto, Pablo Rodriguez-Mier, Julio Saez-Rodriguez, Denes Türei, Veronica Venafra

Ngôn ngữ: eng

Ký hiệu phân loại: 294.593 Oral traditions

Thông tin xuất bản: England : Bioinformatics (Oxford, England) , 2025

Mô tả vật lý:

Bộ sưu tập: NCBI

ID: 497390

SUMMARY: We present NetworkCommons, a platform for integrating prior knowledge, omics data, and network inference methods, facilitating their usage and evaluation. NetworkCommons aims to be an infrastructure for the network biology community that supports the development of better methods and benchmarks, by enhancing interoperability and integration. AVAILABILITY AND IMPLEMENTATION: NetworkCommons is implemented in Python and offers programmatic access to multiple omics datasets, network inference methods, and benchmarking setups. It is a free software, available at https://github.com/saezlab/networkcommons, and deposited in Zenodo at https://doi.org/10.5281/zenodo.14719118.
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