BACKGROUND: The high fat content in oat seeds makes them susceptible to aging during storage, leading to reduced seed vigor, delayed germination, and even seed death. Much evidence suggests that lipid remodeling is closely associated with successful seed germination. However, the dynamic behavior and response mechanisms of lipids during the germination of aged oat seeds remain unclear. In this study, 'Monida' (aging-tolerant) and 'Haywire' (aging-sensitive), were used to investigate the lipid profiles in the embryo and endosperm and the dynamic transcriptomic differences in the embryo during the germination. RESULTS: The results demonstrate that phospholipid alterations during the germination of aged seeds are more significant compared to unaged seeds, indicating that aging affects lipid remodeling during germination, particularly in the 'Haywire'. Further analysis revealed that the most critical lipid response events occurred at the end of germination stage II (32 h) in embryo, primarily regulated through the PLC-DGK pathway to modulate phospholipid and glycerolipid molecules. Specifically, transcripts of PLC, DGK, and DGAT were upregulated, promoting the generation of diacylglycerol (DG) from various phospholipids, which further increased the monogalactosyldiacylglycerol/digalactosyldiacylglycerol (MGDG/DGDG) ratio, thereby influencing membrane repair. Additionally, at 6 h of germination in aged seeds, PC(3:0/0:0) levels significantly decreased. Compared to 'Monida,' the aging-sensitive 'Haywire' seeds exhibited substantial production of PE(19:0/0:0) and PC(15:0/0:0) at 32 h of germination, which may be key factors contributing to the seed's sensitivity to aging and the significant reduction in germination percentage after aging. Therefore, PC(3:0/0:0), PE(19:0/0:0), and PC(15:0/0:0) could serve as important lipid metabolic markers in future studies on the mechanisms of oat seed vigor. CONCLUSIONS: The findings of this study provide insights into the specificity of lipid remodeling and its response mechanisms during the germination of aged oat seeds, providing a theoretical foundation for the safe preservation of oat germplasm and the development of aging-tolerant varieties.