Ag-In-Se/ZnSe core/shell nanocrystals exhibit good photoluminescence quantum yield (PLQY), yet intriguingly, the maximum PLQY is first reached after several days of storage. We hypothesize that this may be due to cationic rearrangement in the nanocrystal post-synthesis. To test this hypothesis, we computationally generated ternary Ag-In-Se and quaternary Ag-In-Zn-Se nanocrystals with varying degrees of cationic disorder, as quantified by the distribution of the metal cation valence electrons in the tetrahedra around Se anions. We then used density functional theory-parametrized tight-binding simulations to study the electronic structure and optical properties of these systems as a function of the homogeneity of the valence electron distribution in a tetrahedron. We found that homogeneous distribution of cations leads to a larger band gap and optical coupling, and that, in the presence of Ag