Population genetics meets ecology: a guide to individual-based simulations in continuous landscapes.

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Tác giả: Victoria Caudill, Samuel E Champer, Elizabeth T Chevy, Benjamin C Haller, Andrew D Kern, Philipp W Messer, Jiseon Min, Peter L Ralph, Sohini Ramachandran, Clara T Rehmann, Chris C R Smith, Silas Tittes

Ngôn ngữ: eng

Ký hiệu phân loại: 785.13 *Trios

Thông tin xuất bản: United States : bioRxiv : the preprint server for biology , 2025

Mô tả vật lý:

Bộ sưu tập: NCBI

ID: 677322

 Individual-based simulation has become an increasingly crucial tool for many fields of population biology. However, continuous geography is important to many applications, and implementing realistic and stable simulations in continuous space presents a variety of difficulties, from modeling choices to computational efficiency. This paper aims to be a practical guide to spatial simulation, helping researchers to implement individual-based simulations and avoid common pitfalls. To do this, we delve into mechanisms of mating, reproduction, density-dependent feedback, and dispersal, all of which may vary across the landscape, discuss how these affect population dynamics, and describe how to parameterize simulations in convenient ways (for instance, to achieve a desired population density). We also demonstrate how to implement these models using the current version of the individual-based simulator, SLiM. We additionally discuss natural selection -- in particular, how genetic variation can affect demographic processes. Finally, we provide four short vignettes: simulations of pikas that shift their range up a mountain as temperatures rise
  mosquitoes that live in rivers as juveniles and experience seasonally changing habitat
  cane toads that expand across Australia, reaching 120 million individuals
  and monarch butterflies whose populations are regulated by an explicitly modeled resource (milkweed).
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