Global warming-induced abiotic stresses, such as waterlogging, significantly threaten crop yields. Increased rainfall intensity in recent years has exacerbated waterlogging severity, especially in lowlands and heavy soils. Its intensity is projected to increase by 14-35% in the future, posing a serious risk to crop production and the achievement of sustainable development goals. Soybean, a major global commercial crop cultivated across diverse climates, is highly sensitive to waterlogging, with yield losses of up to 83% due to impaired root morphology and growth. Therefore, understanding the stage-specific response of soybean to varying intensities of waterlogging under different climate regimes is crucial to mitigate the impact of climate change. This study evaluated two climate regimes (Summer: C