This study aimed to evaluate the capacity of infrared thermography (IRT) to be used for the in situ clinical assessment of udder health status across lactation in goats. Two epidemiological studies were designed, with 106 purebred Skopelos goats being prospectively monitored over one lactation in the first study and 132 goats of the same breed from a second farm being enrolled in the second, cross-sectional study. Goats were categorized based on the clinical status of each udder half (healthy, fibrotic, both fibrotic and asymmetric, asymmetric, swollen supra-mammary lymph nodes, and abscessed). Skin surface temperature values of teats (TSST) and udder halves (USST), as well as temperature variations between different types of abscesses, based on the stage of their development (superficial developed, superficial fully mature, drained), and the symmetrical sites of the non-affected udder halves, were evaluated. Mixed linear regression analyses indicated that fibrosis, particularly when accompanied by asymmetry, resulted in a decrease of 0.2, 0.3, and 0.3 °C (