Consideration of a Liquid Mutation-accumulation Experiment to Measure Mutation Rates by Successive Serial Dilution.

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Tác giả: Stephan Baehr, Adalyn Brown, Alyssa Cenzano, Katelyn Hancock, Wei-Chin Ho, Michael Lynch, Sam Miller, Lea Patrick, Sam Perez

Ngôn ngữ: eng

Ký hiệu phân loại:

Thông tin xuất bản: England : Genome biology and evolution , 2025

Mô tả vật lý:

Bộ sưu tập: NCBI

ID: 713167

The mutation-accumulation (MA) experiment is a fixture of evolutionary biology, though its execution is laborious. MA experiments typically take between months and years to acquire sufficient mutations to measure DNA mutation rates and mutation spectra. MA experiments for many organisms rely on colony formation on agar plates and repetitive streaking, an environment which at first glance appears somewhat contrived, a poor imitation of actual environmental living conditions. We propose that a fully liquid-phase mutation-accumulation experiment may at times more accurately reflect the environment of an organism. We note also that whereas automation of streaking plates is a daunting prospect, automation of liquid handling and serial dilution is already commonplace. In principle, this type of MA experiment can be automated so as to reduce the human capital requirements of measuring mutation rates. We demonstrate that a liquid MA recapitulates the mutation rate estimated for MMR- E. coli in liquid LB culture vs. plate LB culture. We detect a modified mutation spectrum with a transition skew of 4.7:1 of A:T→G:C vs G:C→A:T mutations, highlighting the potential role of tautomerization as a mechanism of DNA mutation.
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