Veterinary drug residues in poultry and livestock products present persistent challenges to food safety, necessitating precise and efficient detection methods. Surface-enhanced Raman scattering (SERS) has been identified as a powerful tool for veterinary drug residue analysis due to its high sensitivity and specificity. However, the development of reliable SERS substrates and the interpretation of complex spectral data remain significant obstacles. This review summarizes the development process of SERS substrates, categorizing them into metal-based, rigid, and flexible substrates, and highlighting the emerging trend of multifunctional substrates. The diverse application scenarios and detection requirements for these substrates are also discussed, with a focus on their use in veterinary drug detection. Furthermore, the integration of deep learning techniques into SERS-based detection is explored, including substrate structure design optimization, optical property prediction, spectral preprocessing, and both qualitative and quantitative spectral analyses. Finally, key limitations are briefly outlined, such as challenges in selecting reporter molecules, data imbalance, and computational demands. Future trends and directions for improving SERS-based veterinary drug detection are proposed.