Replicating PET Hydrolytic Activity by Positioning Active Sites with Smaller Synthetic Protein Scaffolds.

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Tác giả: Yujing Ding, Henry Hess, Xian Kong, Shanshan Zhang, Yifei Zhang

Ngôn ngữ: eng

Ký hiệu phân loại:

Thông tin xuất bản: Germany : Advanced science (Weinheim, Baden-Wurttemberg, Germany) , 2025

Mô tả vật lý:

Bộ sưu tập: NCBI

ID: 714701

Evolutionary constraints significantly limit the diversity of naturally occurring enzymes, thereby reducing the sequence repertoire available for enzyme discovery and engineering. Recent breakthroughs in protein structure prediction and de novo design, powered by artificial intelligence, now enable to create enzymes with desired functions without solely relying on traditional genome mining. Here, a computational strategy is demonstrated for creating new-to-nature polyethylene terephthalate hydrolases (PET hydrolases) by leveraging the known catalytic mechanisms and implementing multiple deep learning algorithms and molecular computations. This strategy includes the extraction of functional motifs from a template enzyme (here leaf-branch compost cutinase, LCC, is used), regeneration of new protein sequences, computational screening, experimental validation, and sequence refinement. PET hydrolytic activity is successfully replicated with designer enzymes that are at least 30% shorter in sequence length than LCC. Among them, RsPETase1 stands out due to its robust expressibility. It exhibits comparable catalytic efficiency (k
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