In the past years, latent variable models have played an important role in various industrial AI systems, among which quality prediction is one of the most representative applications. Inspired by the idea of deep learning, those basic latent variable models have been extended to deep forms, based on which the quality prediction performance has been significantly improved. However, different latent variable models have their own strengths and weaknesses, a model works well under one scenario might not provide satisfactory performance under another. The motivation of this article is based on the viewpoint of information fusion and ensemble learning for heterogeneous latent variable models. Particularly, a collaborative deep learning and model fusion framework is formulated for the purpose of industrial quality prediction. In the first stage of the framework, collaborative layer-by-layer feature extractions are implemented among different latent variable models, through which different patterns of latent variables are identified in different layers of the deep model. Then, in the second stage, an ensemble regression modeling strategy is proposed to fuse the quality prediction results from different latent variable models, which is based on a well-designed data description method. Two real industrial examples are used for performance evaluation of the proposed method, based on which we can observe that information fusions in terms of both collaborative layer-by-layer feature extraction and heterogeneous model ensemble have positive effects in improving prediction accuracy and stability.