NMR-based Metabolomics approach assessed phytochemical profile in seed and husk of three cardamom species: Elettaria cardamomum (green), Amomum subulatum (black), and Aframomum corrorima (white). NMR Spectroscopy identified 20 metabolites belonging to sugars, amino-, organic-, fatty acids, terpenes, and phenolics. Multivariate data analyses revealed distinct metabolic profiles among the 3 species, and further in seed versus husk. A. subulatum seed showed the highest sugar and amino acid levels, while E. cardamomum seed was richer in ω-3 fatty acids. Husk, especially from A. subulatum and E. cardamomum, contained high levels of phenolic acids. Compared to other cardamom taxa, A. corrorima exhibited lower levels of most chemicals. This study highlights the potential value of cardamom husk, particularly from A. subulatum and E. cardamomum species enriched in phenolic acids and terpenes known for their antioxidant and antimicrobial properties, for use as a food preservative. The antimicrobial and antioxidant activities were assessed through in vitro assays, revealing their potential for value-added applications in food preservation and therapeutic uses.