Prediction and Characterization of Genetically Regulated Expression of Target Tissues in Asthma.

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Tác giả: Christopher H Arehart, Kathleen C Barnes, Meher Preethi Boorgula, Monica Campbell, Sameer Chavan, Michelle Daya, Erika Esquinca, Camila A Figueiredo, Christopher R Gignoux, Nadia N Hansel, Randi K Johnson, Kai Kammers, Katerina Kechris, Eimear E Kenny, R Clive Landis, Andrew H Liu, Rasika A Mathias, Carole Ober, Christopher O Olopade, Nicholas Rafaels, Alex Romero, Charles N Rotimi, Ingo Ruczinski, Sarah D Slack, Brooke Szczesny, Margaret A Taub, Harold Watson

Ngôn ngữ: eng

Ký hiệu phân loại:

Thông tin xuất bản: United States : medRxiv : the preprint server for health sciences , 2025

Mô tả vật lý:

Bộ sưu tập: NCBI

ID: 738335

BACKGROUND: Genetic control of gene expression in asthma-related tissues is not well-characterized, particularly for African-ancestry populations, limiting advancement in our understanding of the increased prevalence and severity of asthma in those populations. OBJECTIVE: To create novel transcriptome prediction models for asthma tissues (nasal epithelium and CD4+ T cells) and apply them in transcriptome-wide association study (TWAS) to discover candidate asthma genes. METHODS: We developed and validated gene expression prediction databases for unstimulated CD4+ T cells (CD4+T) and nasal epithelium using an elastic net framework. Combining these with existing prediction databases (N=51), we performed TWAS of 9,284 individuals of African-ancestry to identify tissue-specific and cross-tissue candidate genes for asthma. For detailed Methods, please see the Supplemental Methods. RESULTS: Novel databases for CD4+T and nasal epithelial gene expression prediction contain 8,351 and 10,296 genes, respectively, including four asthma loci ( CONCLUSIONS: Expression of
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