Integrated computational analysis identifies therapeutic targets with dual action in cancer cells and T cells.

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Tác giả: Zhidong Gao, Rui Guo, Yufeng He, Yiteng Jin, Luhua Lai, Dian Li, Xiaohong Li, Ce Luo, Deng Pan, Qiang Pan-Hammarström, Chenfei Wang, Lijian Wu, Kai W Wucherpfennig, Teng Xue, Sitong Ye, Zexian Zeng, Peng Zhang, Rui Zhang, Wubing Zhang, Zongxu Zhang, Yanping Zhao

Ngôn ngữ: eng

Ký hiệu phân loại:

Thông tin xuất bản: United States : Immunity , 2025

Mô tả vật lý:

Bộ sưu tập: NCBI

ID: 739331

Many cancer drugs that target cancer cell pathways also impair the immune system. We developed a computational target discovery platform to enable examination of both cancer and immune cells so as to identify pathways that restrain tumor progression and potentiate anti-tumor immunity. Immune-related CRISPR screen analyzer of functional targets (ICRAFT) integrates immune-related CRISPR screen datasets, single-cell RNA sequencing (scRNA-seq) data, and pre-treatment RNA-seq data from clinical trials, enabling a systems-level approach to therapeutic target discovery. Using ICRAFT, we identified numerous targets that enhance both cancer cell susceptibility to immune attack and T cell activation, including tumor necrosis factor (TNF) alpha-induced protein 3 (TNFAIP3), protein tyrosine phosphatase non-receptor type 2 (PTPN2), and suppressor of cytokine signaling 1 (SOCS1). In cancer cells, Tnfaip3 (A20) deletion activated the TNF-nuclear factor kappa-B (NF-κB) pathway, promoting chemokine expression and T cell recruitment to the tumor. T cell-mediated elimination of Tnaifp3-null cancer cells was primarily driven by TNF-induced apoptosis. Inactivation of Tnfaip3 in T cells enhanced anti-tumor efficacy. By integrating diverse functional genomics and clinical datasets, ICRAFT provides an interactive resource toward a deeper understanding of anti-tumor immunity and immuno-oncology drug development.
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