Epidemiology and genetic diversity of classic human astrovirus with whole-genome sequence analysis in inpatient children under 5 years of age in Yunnan, China.

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Tác giả: Yihui Cao, Lihua Chen, Jianping Cun, Wenpeng Gu, Lili Jiang, Zhichao Wang, Xiaofang Zhou, Yongming Zhou

Ngôn ngữ: eng

Ký hiệu phân loại: 344.0955 Labor, social service, education, cultural law

Thông tin xuất bản: England : BMC infectious diseases , 2025

Mô tả vật lý:

Bộ sưu tập: NCBI

ID: 78663

 PURPOSE: The aim of this study was to determine the epidemiology, incidence and genetic diversity of classic human astrovirus (HAstV) in inpatient children under 5 years of age for acute gastroenteritis (AGE). METHODS: A hospital-based surveillance study was conducted across Yunnan Province to investigate the incidence of HAstV among AGE patients. Viral RNA was extracted from stool samples collected from January 2015 to December 2023 from hospitalized children under 5 years of age with AGE. Demographic and clinical data were collected and analysed. The RNA of eligible stool samples (n = 2501) was screened via real-time RT‒PCR assays for the presence of classical HAstV via a real-time PCR diagnostic kit for rapid detection of HAstV (XABT, China). The positive HAstV samples (Ct <
  25) were subjected to next-generation sequencing (NGS), and phylogenetic analysis was performed for genotypic characterization. RESULTS: A total of 2501 stool samples from hospitalized children <
  5 years old were analysed for the presence of classic HAstV from 2015 to 2023. HAstV RNA was detected in 4.88% (122/2501) of the stool samples in the study. There were 1.46 times more male patients than female patients (1484/1017), and their HAstV detection rates were 4.58% (68/1484) and 5.31% (54/1017), respectively, with no statistically significant difference (χ CONCLUSION: This study provided valuable insights into the epidemiology and genotype diversity of HAstVs in hospitalized children under 5 years of age with AGE. The results can be used in future preventive measurements and the development of effective vaccines.
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